Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-07-29_ENC/_hg38_canonical/ALK_5 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  54,145,038
 Normal Paired: 36,434,384 (67.29%)
 Chimeric Paired: 10,878,131 (20.09%)
 Chimeric Ambiguous: 2,563,247 (4.73%)
 Unmapped: 4,269,276 (7.88%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 47,312,515 (87.38%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-08-22T20:06:26,687]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 39,858,821 (73.61%)
PCR Duplicates: 7,289,214 (13.46%)
Optical Duplicates: 164,480 (0.30%)
Library Complexity Estimate: 136,323,022
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 10,518,462 (19.43% / 26.39%)
Hi-C Contacts: 29,340,359 (54.19% / 73.61%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 3% - 91% - 3% - 3%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 83%
 Cis/all (FF and RR orient): 68.5%
Inter-chromosomal: 1,569,962  (2.90% / 3.94%)
Intra-chromosomal: 27,770,397  (51.29% / 69.67%)
Short Range (<20,000bp): 25,959,217  (47.94% / 65.13%)
Long Range (>20,000bp): 1,811,180  (3.35% / 4.54%)