Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-07-29_ENC/_hg38_canonical/ALK_8 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  23,813,418
 Normal Paired: 15,198,842 (63.82%)
 Chimeric Paired: 6,765,797 (28.41%)
 Chimeric Ambiguous: 1,622,197 (6.81%)
 Unmapped: 226,582 (0.95%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 21,964,639 (92.24%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-08-22T17:40:51,998]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 18,991,981 (79.75%)
PCR Duplicates: 2,875,308 (12.07%)
Optical Duplicates: 97,350 (0.41%)
Library Complexity Estimate: 75,691,414
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 1,677,211 (7.04% / 8.83%)
Hi-C Contacts: 17,314,770 (72.71% / 91.17%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 7% - 80% - 7% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 68%
 Cis/all (FF and RR orient): 78.8%
Inter-chromosomal: 1,177,616  (4.95% / 6.20%)
Intra-chromosomal: 16,137,154  (67.76% / 84.97%)
Short Range (<20,000bp): 13,573,229  (57.00% / 71.47%)
Long Range (>20,000bp): 2,563,925  (10.77% / 13.50%)