Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202412201534workoct/Juicer-Out/2024-11-13_ENC/Oncobox/ALK_8 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  46,128,098
 Normal Paired: 34,593,566 (74.99%)
 Chimeric Paired: 9,328,499 (20.22%)
 Chimeric Ambiguous: 1,860,908 (4.03%)
 Unmapped: 345,125 (0.75%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 43,922,065 (95.22%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-11-22T13:41:11,707]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 29,928,333 (64.88%)
PCR Duplicates: 13,838,528 (30.00%)
Optical Duplicates: 155,204 (0.34%)
Library Complexity Estimate: 53,687,096
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,480,572 (9.71% / 14.97%)
Hi-C Contacts: 25,447,761 (55.17% / 85.03%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 8% - 78% - 7% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 64%
 Cis/all (FF and RR orient): 76.5%
Inter-chromosomal: 2,157,858  (4.68% / 7.21%)
Intra-chromosomal: 23,289,903  (50.49% / 77.82%)
Short Range (<20,000bp): 19,435,804  (42.13% / 64.94%)
Long Range (>20,000bp): 3,854,099  (8.36% / 12.88%)