Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-07-29_ENC/_hg38_canonical/ALK_9 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  59,756,773
 Normal Paired: 41,687,433 (69.76%)
 Chimeric Paired: 12,705,406 (21.26%)
 Chimeric Ambiguous: 2,615,213 (4.38%)
 Unmapped: 2,748,721 (4.60%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 54,392,839 (91.02%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-08-22T20:00:31,318]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 46,190,933 (77.30%)
PCR Duplicates: 8,009,837 (13.40%)
Optical Duplicates: 192,069 (0.32%)
Library Complexity Estimate: 164,831,356
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 10,383,687 (17.38% / 22.48%)
Hi-C Contacts: 35,807,246 (59.92% / 77.52%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 4% - 88% - 4% - 4%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 80%
 Cis/all (FF and RR orient): 81.1%
Inter-chromosomal: 1,335,515  (2.23% / 2.89%)
Intra-chromosomal: 34,471,731  (57.69% / 74.63%)
Short Range (<20,000bp): 31,232,309  (52.27% / 67.62%)
Long Range (>20,000bp): 3,239,422  (5.42% / 7.01%)