Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202412201534workoct/Juicer-Out/2024-11-13_ENC/Oncobox/ALK_9 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  47,332,812
 Normal Paired: 36,325,074 (76.74%)
 Chimeric Paired: 9,261,741 (19.57%)
 Chimeric Ambiguous: 1,282,908 (2.71%)
 Unmapped: 463,089 (0.98%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 45,586,815 (96.31%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-11-22T14:25:08,314]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 17,935,751 (37.89%)
PCR Duplicates: 27,544,849 (58.19%)
Optical Duplicates: 106,215 (0.22%)
Library Complexity Estimate: 19,990,477
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 3,410,968 (7.21% / 19.02%)
Hi-C Contacts: 14,524,783 (30.69% / 80.98%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 5% - 85% - 5% - 5%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 76%
 Cis/all (FF and RR orient): 80.3%
Inter-chromosomal: 696,799  (1.47% / 3.88%)
Intra-chromosomal: 13,827,984  (29.21% / 77.10%)
Short Range (<20,000bp): 12,331,284  (26.05% / 68.75%)
Long Range (>20,000bp): 1,496,700  (3.16% / 8.34%)