Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-07-29_ENC/_hg38_canonical/AS_2 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  51,053,735
 Normal Paired: 31,748,044 (62.19%)
 Chimeric Paired: 15,318,603 (30.00%)
 Chimeric Ambiguous: 2,870,309 (5.62%)
 Unmapped: 1,116,779 (2.19%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 47,066,647 (92.19%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-08-22T16:19:47,090]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 40,541,702 (79.41%)
PCR Duplicates: 6,341,779 (12.42%)
Optical Duplicates: 183,166 (0.36%)
Library Complexity Estimate: 157,291,901
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 7,526,290 (14.74% / 18.56%)
Hi-C Contacts: 33,015,412 (64.67% / 81.44%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 6% - 82% - 6% - 6%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 69%
 Cis/all (FF and RR orient): 72.6%
Inter-chromosomal: 2,802,669  (5.49% / 6.91%)
Intra-chromosomal: 30,212,743  (59.18% / 74.52%)
Short Range (<20,000bp): 25,052,439  (49.07% / 61.79%)
Long Range (>20,000bp): 5,160,304  (10.11% / 12.73%)