Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202412201534workoct/Juicer-Out/2024-11-13_ENC/Oncobox/AS_2 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  60,836,728
 Normal Paired: 42,251,507 (69.45%)
 Chimeric Paired: 16,223,163 (26.67%)
 Chimeric Ambiguous: 2,034,271 (3.34%)
 Unmapped: 327,787 (0.54%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 58,474,670 (96.12%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-11-28T15:22:25,343]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 36,717,545 (60.35%)
PCR Duplicates: 21,561,132 (35.44%)
Optical Duplicates: 195,993 (0.32%)
Library Complexity Estimate: 57,820,988
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 6,034,412 (9.92% / 16.43%)
Hi-C Contacts: 30,683,133 (50.44% / 83.57%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 8% - 77% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 62%
 Cis/all (FF and RR orient): 71.2%
Inter-chromosomal: 3,372,711  (5.54% / 9.19%)
Intra-chromosomal: 27,310,422  (44.89% / 74.38%)
Short Range (<20,000bp): 21,768,648  (35.78% / 59.29%)
Long Range (>20,000bp): 5,541,774  (9.11% / 15.09%)