Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2024-01-18_BGI/FFPE/BC122-2 -s none -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  165,186
 Normal Paired: 99,692 (60.35%)
 Chimeric Paired: 49,999 (30.27%)
 Chimeric Ambiguous: 14,898 (9.02%)
 Unmapped: 597 (0.36%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 149,691 (90.62%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-01-23T13:18:06,192]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 148,364 (89.82%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 1,327 (0.80%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 19,780 (11.97% / 13.33%)
Hi-C Contacts: 128,584 (77.84% / 86.67%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 5% - 86% - 5% - 5%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 67%
 Cis/all (FF and RR orient): 48.1%
Inter-chromosomal: 21,917  (13.27% / 14.77%)
Intra-chromosomal: 106,667  (64.57% / 71.90%)
Short Range (<20,000bp): 93,940  (56.87% / 63.32%)
Long Range (>20,000bp): 12,727  (7.70% / 8.58%)