Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-07-29_ENC/_hg38_canonical/BC_105 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  54,059,720
 Normal Paired: 33,455,463 (61.89%)
 Chimeric Paired: 16,114,915 (29.81%)
 Chimeric Ambiguous: 3,269,346 (6.05%)
 Unmapped: 1,219,996 (2.26%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 49,570,378 (91.70%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-08-22T12:49:22,125]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 42,604,565 (78.81%)
PCR Duplicates: 6,769,810 (12.52%)
Optical Duplicates: 196,003 (0.36%)
Library Complexity Estimate: 163,186,973
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 7,566,028 (14.00% / 17.76%)
Hi-C Contacts: 35,038,537 (64.81% / 82.24%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 6% - 81% - 6% - 6%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 70%
 Cis/all (FF and RR orient): 76.3%
Inter-chromosomal: 2,530,003  (4.68% / 5.94%)
Intra-chromosomal: 32,508,534  (60.13% / 76.30%)
Short Range (<20,000bp): 28,054,547  (51.90% / 65.85%)
Long Range (>20,000bp): 4,453,987  (8.24% / 10.45%)