Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202412201534workoct/Juicer-Out/2024-11-13_ENC/Oncobox/BC_105 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  56,685,565
 Normal Paired: 38,996,689 (68.79%)
 Chimeric Paired: 15,055,995 (26.56%)
 Chimeric Ambiguous: 2,267,396 (4.00%)
 Unmapped: 365,485 (0.64%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 54,052,684 (95.36%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-11-22T07:35:40,357]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 33,388,192 (58.90%)
PCR Duplicates: 20,481,844 (36.13%)
Optical Duplicates: 182,648 (0.32%)
Library Complexity Estimate: 51,435,515
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 3,581,411 (6.32% / 10.73%)
Hi-C Contacts: 29,806,781 (52.58% / 89.27%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 8% - 77% - 7% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 63%
 Cis/all (FF and RR orient): 74.1%
Inter-chromosomal: 2,857,572  (5.04% / 8.56%)
Intra-chromosomal: 26,949,209  (47.54% / 80.71%)
Short Range (<20,000bp): 22,729,390  (40.10% / 68.08%)
Long Range (>20,000bp): 4,219,819  (7.44% / 12.64%)