Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2024-01-18_BGI/FFPE/BC122 -s none -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  161,432
 Normal Paired: 103,763 (64.28%)
 Chimeric Paired: 44,813 (27.76%)
 Chimeric Ambiguous: 12,150 (7.53%)
 Unmapped: 706 (0.44%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 148,576 (92.04%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-01-23T13:16:53,332]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 147,026 (91.08%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 1,550 (0.96%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 19,347 (11.98% / 13.16%)
Hi-C Contacts: 127,679 (79.09% / 86.84%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 4% - 87% - 4% - 4%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 26%
 DE: 71%
 Cis/all (FF and RR orient): 50.7%
Inter-chromosomal: 18,378  (11.38% / 12.50%)
Intra-chromosomal: 109,301  (67.71% / 74.34%)
Short Range (<20,000bp): 97,427  (60.35% / 66.27%)
Long Range (>20,000bp): 11,874  (7.36% / 8.08%)