Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-07-29_ENC/_hg38_canonical/BC_122 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  35,294,386
 Normal Paired: 23,486,234 (66.54%)
 Chimeric Paired: 9,118,290 (25.83%)
 Chimeric Ambiguous: 2,412,793 (6.84%)
 Unmapped: 277,069 (0.79%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 32,604,524 (92.38%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-08-23T02:08:21,372]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 28,560,254 (80.92%)
PCR Duplicates: 3,920,212 (11.11%)
Optical Duplicates: 124,058 (0.35%)
Library Complexity Estimate: 123,496,714
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,369,844 (12.38% / 15.30%)
Hi-C Contacts: 24,190,410 (68.54% / 84.70%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 4% - 88% - 4% - 4%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 73%
 Cis/all (FF and RR orient): 51.0%
Inter-chromosomal: 3,184,285  (9.02% / 11.15%)
Intra-chromosomal: 21,006,125  (59.52% / 73.55%)
Short Range (<20,000bp): 18,937,023  (53.65% / 66.31%)
Long Range (>20,000bp): 2,069,102  (5.86% / 7.24%)