Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202412201534workoct/Juicer-Out/2024-11-13_ENC/Oncobox/BC_122 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  69,836,798
 Normal Paired: 52,436,084 (75.08%)
 Chimeric Paired: 14,033,238 (20.09%)
 Chimeric Ambiguous: 3,006,342 (4.30%)
 Unmapped: 361,134 (0.52%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 66,469,322 (95.18%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-11-22T18:04:24,516]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 42,302,649 (60.57%)
PCR Duplicates: 23,953,022 (34.30%)
Optical Duplicates: 213,651 (0.31%)
Library Complexity Estimate: 67,876,358
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,541,998 (6.50% / 10.74%)
Hi-C Contacts: 37,760,651 (54.07% / 89.26%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 5% - 85% - 5% - 5%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 65%
 Cis/all (FF and RR orient): 44.4%
Inter-chromosomal: 7,391,940  (10.58% / 17.47%)
Intra-chromosomal: 30,368,711  (43.49% / 71.79%)
Short Range (<20,000bp): 26,770,275  (38.33% / 63.28%)
Long Range (>20,000bp): 3,598,436  (5.15% / 8.51%)