Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202412201534workoct/Juicer-Out/2024-11-13_ENC/Oncobox/BC_122 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  69,836,798
 Normal Paired: 52,436,084 (75.08%)
 Chimeric Paired: 14,033,238 (20.09%)
 Chimeric Ambiguous: 3,006,342 (4.30%)
 Unmapped: 361,134 (0.52%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 66,469,322 (95.18%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-11-22T18:04:24,516]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 42,302,649 (60.57%)
PCR Duplicates: 23,953,022 (34.30%)
Optical Duplicates: 213,651 (0.31%)
Library Complexity Estimate: 67,876,358
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 6,691,662 (9.58% / 15.82%)
Hi-C Contacts: 35,610,987 (50.99% / 84.18%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 5% - 86% - 5% - 5%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 66%
 Cis/all (FF and RR orient): 45.1%
Inter-chromosomal: 6,667,511  (9.55% / 15.76%)
Intra-chromosomal: 28,943,476  (41.44% / 68.42%)
Short Range (<20,000bp): 25,638,373  (36.71% / 60.61%)
Long Range (>20,000bp): 3,305,103  (4.73% / 7.81%)