Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202412201534workoct/Juicer-Out/2024-11-13_ENC/Oncobox/BC_123 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  43,460,535
 Normal Paired: 32,972,546 (75.87%)
 Chimeric Paired: 8,392,564 (19.31%)
 Chimeric Ambiguous: 1,753,970 (4.04%)
 Unmapped: 341,455 (0.79%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 41,365,110 (95.18%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-11-28T15:05:01,432]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 31,503,135 (72.49%)
PCR Duplicates: 9,701,631 (22.32%)
Optical Duplicates: 160,344 (0.37%)
Library Complexity Estimate: 73,147,966
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,816,669 (11.08% / 15.29%)
Hi-C Contacts: 26,686,466 (61.40% / 84.71%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 6% - 82% - 6% - 6%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 62%
 Cis/all (FF and RR orient): 53.6%
Inter-chromosomal: 4,656,044  (10.71% / 14.78%)
Intra-chromosomal: 22,030,422  (50.69% / 69.93%)
Short Range (<20,000bp): 18,547,456  (42.68% / 58.87%)
Long Range (>20,000bp): 3,482,966  (8.01% / 11.06%)