Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-07-29_ENC/_hg38_canonical/ChC_13 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  31,902,561
 Normal Paired: 20,262,917 (63.52%)
 Chimeric Paired: 9,260,537 (29.03%)
 Chimeric Ambiguous: 1,803,346 (5.65%)
 Unmapped: 575,761 (1.80%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 29,523,454 (92.54%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-08-22T04:54:42,336]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 25,553,990 (80.10%)
PCR Duplicates: 3,849,448 (12.07%)
Optical Duplicates: 120,016 (0.38%)
Library Complexity Estimate: 102,265,521
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 2,861,777 (8.97% / 11.20%)
Hi-C Contacts: 22,692,213 (71.13% / 88.80%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 6% - 83% - 6% - 6%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 69%
 Cis/all (FF and RR orient): 64.4%
Inter-chromosomal: 2,513,011  (7.88% / 9.83%)
Intra-chromosomal: 20,179,202  (63.25% / 78.97%)
Short Range (<20,000bp): 17,257,680  (54.09% / 67.53%)
Long Range (>20,000bp): 2,921,522  (9.16% / 11.43%)