Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-07-29_ENC/_hg38_canonical/ChC_13 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  31,902,561
 Normal Paired: 20,262,917 (63.52%)
 Chimeric Paired: 9,260,537 (29.03%)
 Chimeric Ambiguous: 1,803,346 (5.65%)
 Unmapped: 575,761 (1.80%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 29,523,454 (92.54%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-08-22T04:54:42,336]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 25,553,990 (80.10%)
PCR Duplicates: 3,849,448 (12.07%)
Optical Duplicates: 120,016 (0.38%)
Library Complexity Estimate: 102,265,521
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,314,672 (13.52% / 16.88%)
Hi-C Contacts: 21,239,318 (66.58% / 83.12%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 5% - 84% - 5% - 5%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 70%
 Cis/all (FF and RR orient): 65.9%
Inter-chromosomal: 2,157,119  (6.76% / 8.44%)
Intra-chromosomal: 19,082,199  (59.81% / 74.67%)
Short Range (<20,000bp): 16,408,165  (51.43% / 64.21%)
Long Range (>20,000bp): 2,674,034  (8.38% / 10.46%)