Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202412201534workoct/Juicer-Out/2024-11-13_ENC/Oncobox/ChC_13 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  56,534,442
 Normal Paired: 40,463,239 (71.57%)
 Chimeric Paired: 13,733,008 (24.29%)
 Chimeric Ambiguous: 2,078,093 (3.68%)
 Unmapped: 260,102 (0.46%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 54,196,247 (95.86%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-11-21T19:43:58,239]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 29,819,863 (52.75%)
PCR Duplicates: 24,217,004 (42.84%)
Optical Duplicates: 159,380 (0.28%)
Library Complexity Estimate: 40,463,248
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 5,105,260 (9.03% / 17.12%)
Hi-C Contacts: 24,714,603 (43.72% / 82.88%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 7% - 80% - 7% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 63%
 Cis/all (FF and RR orient): 63.9%
Inter-chromosomal: 3,310,913  (5.86% / 11.10%)
Intra-chromosomal: 21,403,690  (37.86% / 71.78%)
Short Range (<20,000bp): 17,751,466  (31.40% / 59.53%)
Long Range (>20,000bp): 3,652,224  (6.46% / 12.25%)