Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-07-29_ENC/_hg38_canonical/ES_1 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  43,650,744
 Normal Paired: 26,523,339 (60.76%)
 Chimeric Paired: 13,825,471 (31.67%)
 Chimeric Ambiguous: 2,605,423 (5.97%)
 Unmapped: 696,511 (1.60%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 40,348,810 (92.44%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-08-22T15:16:42,947]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 35,282,143 (80.83%)
PCR Duplicates: 4,912,452 (11.25%)
Optical Duplicates: 154,215 (0.35%)
Library Complexity Estimate: 150,749,326
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 5,833,787 (13.36% / 16.53%)
Hi-C Contacts: 29,448,356 (67.46% / 83.47%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 7% - 80% - 7% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 67%
 Cis/all (FF and RR orient): 76.6%
Inter-chromosomal: 2,267,704  (5.20% / 6.43%)
Intra-chromosomal: 27,180,652  (62.27% / 77.04%)
Short Range (<20,000bp): 22,650,676  (51.89% / 64.20%)
Long Range (>20,000bp): 4,529,976  (10.38% / 12.84%)