Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202412201534workoct/Juicer-Out/2024-11-13_ENC/Oncobox/ES_1 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22 Sequenced Read Pairs: 55,868,360 Normal Paired: 38,874,626 (69.58%) Chimeric Paired: 14,647,939 (26.22%) Chimeric Ambiguous: 2,048,953 (3.67%) Unmapped: 296,842 (0.53%) Ligation Motif Present: 0 (0.00%) Alignable (Normal+Chimeric Paired): 53,522,565 (95.80%) WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2024-11-22T09:20:06,084] [Globals.java:138] [main] Development mode is enabled Unique Reads: 37,424,604 (66.99%) PCR Duplicates: 15,908,848 (28.48%) Optical Duplicates: 189,113 (0.34%) Library Complexity Estimate: 70,560,331 Intra-fragment Reads: 0 (0.00% / 0.00%) Below MAPQ Threshold: 5,736,994 (10.27% / 15.33%) Hi-C Contacts: 31,687,610 (56.72% / 84.67%) Ligation Motif Present: 0 (0.00% / 0.00%) 3' Bias (Long Range): 0% - 0% Pair Type intra chrom %(L-I-O-R): 8% - 76% - 8% - 8% Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25% DE: 61% Cis/all (FF and RR orient): 75.9% Inter-chromosomal: 2,986,619 (5.35% / 7.98%) Intra-chromosomal: 28,700,991 (51.37% / 76.69%) Short Range (<20,000bp): 23,203,651 (41.53% / 62.00%) Long Range (>20,000bp): 5,497,340 (9.84% / 14.69%)