Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202412201534workoct/Juicer-Out/2024-11-13_ENC/Oncobox/ES_1 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  55,868,360
 Normal Paired: 38,874,626 (69.58%)
 Chimeric Paired: 14,647,939 (26.22%)
 Chimeric Ambiguous: 2,048,953 (3.67%)
 Unmapped: 296,842 (0.53%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 53,522,565 (95.80%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-11-22T09:20:06,084]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 37,424,604 (66.99%)
PCR Duplicates: 15,908,848 (28.48%)
Optical Duplicates: 189,113 (0.34%)
Library Complexity Estimate: 70,560,331
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 5,736,994 (10.27% / 15.33%)
Hi-C Contacts: 31,687,610 (56.72% / 84.67%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 8% - 76% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 61%
 Cis/all (FF and RR orient): 75.9%
Inter-chromosomal: 2,986,619  (5.35% / 7.98%)
Intra-chromosomal: 28,700,991  (51.37% / 76.69%)
Short Range (<20,000bp): 23,203,651  (41.53% / 62.00%)
Long Range (>20,000bp): 5,497,340  (9.84% / 14.69%)