Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-07-29_ENC/_hg38_canonical/HE_1 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  40,219,870
 Normal Paired: 25,453,764 (63.29%)
 Chimeric Paired: 11,844,290 (29.45%)
 Chimeric Ambiguous: 2,125,567 (5.28%)
 Unmapped: 796,249 (1.98%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 37,298,054 (92.74%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-08-22T06:58:33,287]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 32,348,756 (80.43%)
PCR Duplicates: 4,806,530 (11.95%)
Optical Duplicates: 142,768 (0.35%)
Library Complexity Estimate: 130,936,001
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 5,600,577 (13.92% / 17.31%)
Hi-C Contacts: 26,748,179 (66.50% / 82.69%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 6% - 83% - 6% - 6%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 70%
 Cis/all (FF and RR orient): 70.4%
Inter-chromosomal: 2,392,957  (5.95% / 7.40%)
Intra-chromosomal: 24,355,222  (60.56% / 75.29%)
Short Range (<20,000bp): 20,112,533  (50.01% / 62.17%)
Long Range (>20,000bp): 4,242,689  (10.55% / 13.12%)