Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202412201534workoct/Juicer-Out/2024-11-13_ENC/Oncobox/HE_1 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  64,684,274
 Normal Paired: 45,921,002 (70.99%)
 Chimeric Paired: 16,454,837 (25.44%)
 Chimeric Ambiguous: 2,012,015 (3.11%)
 Unmapped: 296,420 (0.46%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 62,375,839 (96.43%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-11-21T21:40:51,392]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 33,295,411 (51.47%)
PCR Duplicates: 28,902,831 (44.68%)
Optical Duplicates: 177,597 (0.27%)
Library Complexity Estimate: 43,997,943
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,106,901 (6.35% / 12.33%)
Hi-C Contacts: 29,188,510 (45.12% / 87.67%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 7% - 78% - 7% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 62%
 Cis/all (FF and RR orient): 66.8%
Inter-chromosomal: 3,705,024  (5.73% / 11.13%)
Intra-chromosomal: 25,483,486  (39.40% / 76.54%)
Short Range (<20,000bp): 20,032,301  (30.97% / 60.17%)
Long Range (>20,000bp): 5,451,185  (8.43% / 16.37%)