Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-07-29_ENC/_hg38_canonical/LpS_3 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  22,878,300
 Normal Paired: 14,364,563 (62.79%)
 Chimeric Paired: 6,903,575 (30.18%)
 Chimeric Ambiguous: 1,340,506 (5.86%)
 Unmapped: 269,656 (1.18%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 21,268,138 (92.96%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-08-22T03:17:59,848]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 17,939,797 (78.41%)
PCR Duplicates: 3,220,818 (14.08%)
Optical Duplicates: 107,523 (0.47%)
Library Complexity Estimate: 62,263,437
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 2,402,170 (10.50% / 13.39%)
Hi-C Contacts: 15,537,627 (67.91% / 86.61%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 7% - 80% - 7% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 68%
 Cis/all (FF and RR orient): 75.3%
Inter-chromosomal: 1,245,413  (5.44% / 6.94%)
Intra-chromosomal: 14,292,214  (62.47% / 79.67%)
Short Range (<20,000bp): 12,052,032  (52.68% / 67.18%)
Long Range (>20,000bp): 2,240,182  (9.79% / 12.49%)