Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202412201534workoct/Juicer-Out/2024-11-13_ENC/Oncobox/LpS_3 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  67,574,771
 Normal Paired: 50,634,151 (74.93%)
 Chimeric Paired: 14,216,860 (21.04%)
 Chimeric Ambiguous: 2,276,240 (3.37%)
 Unmapped: 447,520 (0.66%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 64,851,011 (95.97%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-11-21T17:32:42,494]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 41,248,221 (61.04%)
PCR Duplicates: 23,376,077 (34.59%)
Optical Duplicates: 226,713 (0.34%)
Library Complexity Estimate: 66,154,861
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,145,610 (6.13% / 10.05%)
Hi-C Contacts: 37,102,611 (54.91% / 89.95%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 8% - 76% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 60%
 Cis/all (FF and RR orient): 70.3%
Inter-chromosomal: 4,411,714  (6.53% / 10.70%)
Intra-chromosomal: 32,690,897  (48.38% / 79.25%)
Short Range (<20,000bp): 26,835,487  (39.71% / 65.06%)
Long Range (>20,000bp): 5,855,410  (8.67% / 14.20%)