Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-07-29_ENC/_hg38_canonical/LuC_100 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  43,280,903
 Normal Paired: 29,625,769 (68.45%)
 Chimeric Paired: 11,133,033 (25.72%)
 Chimeric Ambiguous: 1,812,543 (4.19%)
 Unmapped: 709,558 (1.64%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 40,758,802 (94.17%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-08-22T12:15:59,171]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 35,227,553 (81.39%)
PCR Duplicates: 5,384,018 (12.44%)
Optical Duplicates: 147,231 (0.34%)
Library Complexity Estimate: 139,306,725
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 3,335,361 (7.71% / 9.47%)
Hi-C Contacts: 31,892,192 (73.69% / 90.53%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 5% - 84% - 5% - 5%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 74%
 Cis/all (FF and RR orient): 74.5%
Inter-chromosomal: 2,155,292  (4.98% / 6.12%)
Intra-chromosomal: 29,736,900  (68.71% / 84.41%)
Short Range (<20,000bp): 26,270,454  (60.70% / 74.57%)
Long Range (>20,000bp): 3,466,446  (8.01% / 9.84%)