Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202412201534workoct/Juicer-Out/2024-11-13_ENC/Oncobox/LuC_100 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                   
Sequenced Read Pairs:  80,966,722
 Normal Paired: 61,844,961 (76.38%)
 Chimeric Paired: 16,772,734 (20.72%)
 Chimeric Ambiguous: 2,005,301 (2.48%)
 Unmapped: 343,726 (0.42%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 78,617,695 (97.10%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-11-28T18:16:12,181]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 33,027,424 (40.79%)
PCR Duplicates: 45,410,904 (56.09%)
Optical Duplicates: 179,367 (0.22%)
Library Complexity Estimate: 37,756,107
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 3,752,103 (4.63% / 11.36%)
Hi-C Contacts: 29,275,321 (36.16% / 88.64%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 7% - 80% - 7% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 67%
 Cis/all (FF and RR orient): 75.0%
Inter-chromosomal: 2,399,676  (2.96% / 7.27%)
Intra-chromosomal: 26,875,645  (33.19% / 81.37%)
Short Range (<20,000bp): 22,992,179  (28.40% / 69.62%)
Long Range (>20,000bp): 3,883,466  (4.80% / 11.76%)