Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-07-29_ENC/_hg38_canonical/LuC_104 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  68,246,310
 Normal Paired: 44,022,376 (64.51%)
 Chimeric Paired: 17,575,597 (25.75%)
 Chimeric Ambiguous: 3,964,887 (5.81%)
 Unmapped: 2,683,450 (3.93%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 61,597,973 (90.26%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-08-22T23:51:03,826]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 52,724,795 (77.26%)
PCR Duplicates: 8,645,574 (12.67%)
Optical Duplicates: 227,604 (0.33%)
Library Complexity Estimate: 196,840,965
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 8,037,528 (11.78% / 15.24%)
Hi-C Contacts: 44,687,267 (65.48% / 84.76%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 5% - 84% - 5% - 5%
 Pair Type inter chrom %(L-I-O-R): 24% - 26% - 24% - 26%
 DE: 73%
 Cis/all (FF and RR orient): 75.5%
Inter-chromosomal: 2,952,549  (4.33% / 5.60%)
Intra-chromosomal: 41,734,718  (61.15% / 79.16%)
Short Range (<20,000bp): 36,757,138  (53.86% / 69.72%)
Long Range (>20,000bp): 4,977,580  (7.29% / 9.44%)