Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202412201534workoct/Juicer-Out/2024-11-13_ENC/Oncobox/LuC_104 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                   
Sequenced Read Pairs:  68,442,955
 Normal Paired: 48,976,196 (71.56%)
 Chimeric Paired: 16,198,644 (23.67%)
 Chimeric Ambiguous: 2,606,910 (3.81%)
 Unmapped: 661,205 (0.97%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 65,174,840 (95.23%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-11-22T16:56:43,493]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 36,105,614 (52.75%)
PCR Duplicates: 28,868,512 (42.18%)
Optical Duplicates: 200,714 (0.29%)
Library Complexity Estimate: 49,306,921
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,331,124 (6.33% / 12.00%)
Hi-C Contacts: 31,774,490 (46.42% / 88.00%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 7% - 80% - 7% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 67%
 Cis/all (FF and RR orient): 75.0%
Inter-chromosomal: 2,593,678  (3.79% / 7.18%)
Intra-chromosomal: 29,180,812  (42.64% / 80.82%)
Short Range (<20,000bp): 25,219,378  (36.85% / 69.85%)
Long Range (>20,000bp): 3,961,434  (5.79% / 10.97%)