Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-07-29_ENC/_hg38_canonical/LuC_46 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  27,148,263
 Normal Paired: 17,653,992 (65.03%)
 Chimeric Paired: 7,338,725 (27.03%)
 Chimeric Ambiguous: 1,792,418 (6.60%)
 Unmapped: 363,128 (1.34%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 24,992,717 (92.06%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-08-22T08:37:02,612]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 21,591,151 (79.53%)
PCR Duplicates: 3,302,130 (12.16%)
Optical Duplicates: 99,436 (0.37%)
Library Complexity Estimate: 85,334,191
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 3,574,330 (13.17% / 16.55%)
Hi-C Contacts: 18,016,821 (66.36% / 83.45%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 6% - 83% - 6% - 6%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 72%
 Cis/all (FF and RR orient): 73.9%
Inter-chromosomal: 1,319,637  (4.86% / 6.11%)
Intra-chromosomal: 16,697,184  (61.50% / 77.33%)
Short Range (<20,000bp): 14,737,834  (54.29% / 68.26%)
Long Range (>20,000bp): 1,959,350  (7.22% / 9.07%)