Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202412201534workoct/Juicer-Out/2024-11-13_ENC/Oncobox/LuC_46 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  57,373,986
 Normal Paired: 41,396,053 (72.15%)
 Chimeric Paired: 13,004,812 (22.67%)
 Chimeric Ambiguous: 2,526,278 (4.40%)
 Unmapped: 446,843 (0.78%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 54,400,865 (94.82%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-11-21T23:08:27,340]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 34,278,107 (59.75%)
PCR Duplicates: 19,935,088 (34.75%)
Optical Duplicates: 187,670 (0.33%)
Library Complexity Estimate: 54,246,632
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 3,618,448 (6.31% / 10.56%)
Hi-C Contacts: 30,659,659 (53.44% / 89.44%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 7% - 80% - 7% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 65%
 Cis/all (FF and RR orient): 68.1%
Inter-chromosomal: 3,455,628  (6.02% / 10.08%)
Intra-chromosomal: 27,204,031  (47.42% / 79.36%)
Short Range (<20,000bp): 23,588,261  (41.11% / 68.81%)
Long Range (>20,000bp): 3,615,770  (6.30% / 10.55%)