Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202412201534workoct/Juicer-Out/2024-11-13_ENC/Oncobox/LuC_46 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  57,373,986
 Normal Paired: 41,396,053 (72.15%)
 Chimeric Paired: 13,004,812 (22.67%)
 Chimeric Ambiguous: 2,526,278 (4.40%)
 Unmapped: 446,843 (0.78%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 54,400,865 (94.82%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-11-21T23:08:27,340]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 34,278,107 (59.75%)
PCR Duplicates: 19,935,088 (34.75%)
Optical Duplicates: 187,670 (0.33%)
Library Complexity Estimate: 54,246,632
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 5,330,095 (9.29% / 15.55%)
Hi-C Contacts: 28,948,012 (50.45% / 84.45%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 7% - 80% - 6% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 66%
 Cis/all (FF and RR orient): 69.0%
Inter-chromosomal: 3,076,820  (5.36% / 8.98%)
Intra-chromosomal: 25,871,192  (45.09% / 75.47%)
Short Range (<20,000bp): 22,558,792  (39.32% / 65.81%)
Long Range (>20,000bp): 3,312,400  (5.77% / 9.66%)