Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-07-29_ENC/_hg38_canonical/LuC_54 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  47,858,452
 Normal Paired: 31,428,137 (65.67%)
 Chimeric Paired: 12,319,619 (25.74%)
 Chimeric Ambiguous: 3,054,933 (6.38%)
 Unmapped: 1,055,763 (2.21%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 43,747,756 (91.41%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-08-22T12:01:28,293]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 38,032,331 (79.47%)
PCR Duplicates: 5,560,871 (11.62%)
Optical Duplicates: 154,554 (0.32%)
Library Complexity Estimate: 156,006,571
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,955,662 (10.35% / 13.03%)
Hi-C Contacts: 33,076,669 (69.11% / 86.97%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 4% - 88% - 4% - 4%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 73%
 Cis/all (FF and RR orient): 51.8%
Inter-chromosomal: 4,319,114  (9.02% / 11.36%)
Intra-chromosomal: 28,757,555  (60.09% / 75.61%)
Short Range (<20,000bp): 26,798,462  (56.00% / 70.46%)
Long Range (>20,000bp): 1,959,093  (4.09% / 5.15%)