Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202412201534workoct/Juicer-Out/2024-11-13_ENC/Oncobox/LuC_54 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  83,576,006
 Normal Paired: 61,606,083 (73.71%)
 Chimeric Paired: 18,391,166 (22.01%)
 Chimeric Ambiguous: 3,128,353 (3.74%)
 Unmapped: 450,404 (0.54%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 79,997,249 (95.72%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-11-22T02:59:30,698]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 37,808,722 (45.24%)
PCR Duplicates: 41,985,736 (50.24%)
Optical Duplicates: 202,791 (0.24%)
Library Complexity Estimate: 45,856,972
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 5,203,479 (6.23% / 13.76%)
Hi-C Contacts: 32,605,243 (39.01% / 86.24%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 5% - 85% - 5% - 5%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 68%
 Cis/all (FF and RR orient): 52.2%
Inter-chromosomal: 5,035,500  (6.03% / 13.32%)
Intra-chromosomal: 27,569,743  (32.99% / 72.92%)
Short Range (<20,000bp): 25,376,852  (30.36% / 67.12%)
Long Range (>20,000bp): 2,192,891  (2.62% / 5.80%)