Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-07-29_ENC/_hg38_canonical/LuC_62 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  56,372,695
 Normal Paired: 36,371,970 (64.52%)
 Chimeric Paired: 14,647,114 (25.98%)
 Chimeric Ambiguous: 3,477,600 (6.17%)
 Unmapped: 1,876,011 (3.33%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 51,019,084 (90.50%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-08-22T09:36:27,269]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 44,195,512 (78.40%)
PCR Duplicates: 6,649,416 (11.80%)
Optical Duplicates: 174,156 (0.31%)
Library Complexity Estimate: 177,047,540
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 9,187,420 (16.30% / 20.79%)
Hi-C Contacts: 35,008,092 (62.10% / 79.21%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 5% - 85% - 5% - 5%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 75%
 Cis/all (FF and RR orient): 74.2%
Inter-chromosomal: 2,289,622  (4.06% / 5.18%)
Intra-chromosomal: 32,718,470  (58.04% / 74.03%)
Short Range (<20,000bp): 28,983,808  (51.41% / 65.58%)
Long Range (>20,000bp): 3,734,662  (6.62% / 8.45%)