Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202412201534workoct/Juicer-Out/2024-11-13_ENC/Oncobox/LuC_62 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  97,338,094
 Normal Paired: 70,093,574 (72.01%)
 Chimeric Paired: 22,590,735 (23.21%)
 Chimeric Ambiguous: 3,997,032 (4.11%)
 Unmapped: 656,753 (0.67%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 92,684,309 (95.22%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-11-22T01:07:50,772]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 36,190,794 (37.18%)
PCR Duplicates: 56,294,196 (57.83%)
Optical Duplicates: 199,319 (0.20%)
Library Complexity Estimate: 40,227,940
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 6,855,083 (7.04% / 18.94%)
Hi-C Contacts: 29,335,711 (30.14% / 81.06%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 7% - 80% - 6% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 67%
 Cis/all (FF and RR orient): 73.9%
Inter-chromosomal: 2,505,386  (2.57% / 6.92%)
Intra-chromosomal: 26,830,325  (27.56% / 74.14%)
Short Range (<20,000bp): 23,088,676  (23.72% / 63.80%)
Long Range (>20,000bp): 3,741,649  (3.84% / 10.34%)