Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2024-01-18_BGI/FFPE/LnC95 -s none -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  256,222
 Normal Paired: 175,926 (68.66%)
 Chimeric Paired: 61,818 (24.13%)
 Chimeric Ambiguous: 16,249 (6.34%)
 Unmapped: 2,229 (0.87%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 237,744 (92.79%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-01-23T13:37:20,423]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 235,523 (91.92%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 2,221 (0.87%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 37,749 (14.73% / 16.03%)
Hi-C Contacts: 197,774 (77.19% / 83.97%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 4% - 88% - 4% - 4%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 76%
 Cis/all (FF and RR orient): 59.5%
Inter-chromosomal: 19,444  (7.59% / 8.26%)
Intra-chromosomal: 178,330  (69.60% / 75.72%)
Short Range (<20,000bp): 166,218  (64.87% / 70.57%)
Long Range (>20,000bp): 12,112  (4.73% / 5.14%)