Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-07-29_ENC/_hg38_canonical/LuC_95 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  85,661,137
 Normal Paired: 62,112,475 (72.51%)
 Chimeric Paired: 17,363,033 (20.27%)
 Chimeric Ambiguous: 4,126,321 (4.82%)
 Unmapped: 2,059,308 (2.40%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 79,475,508 (92.78%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-08-23T02:50:54,329]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 67,507,417 (78.81%)
PCR Duplicates: 11,700,956 (13.66%)
Optical Duplicates: 267,135 (0.31%)
Library Complexity Estimate: 240,986,589
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 9,753,002 (11.39% / 14.45%)
Hi-C Contacts: 57,754,415 (67.42% / 85.55%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 3% - 90% - 3% - 3%
 Pair Type inter chrom %(L-I-O-R): 24% - 25% - 25% - 26%
 DE: 80%
 Cis/all (FF and RR orient): 59.3%
Inter-chromosomal: 4,700,573  (5.49% / 6.96%)
Intra-chromosomal: 53,053,842  (61.93% / 78.59%)
Short Range (<20,000bp): 50,221,766  (58.63% / 74.39%)
Long Range (>20,000bp): 2,832,076  (3.31% / 4.20%)