Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202412201534workoct/Juicer-Out/2024-11-13_ENC/Oncobox/LuC_95 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  17,358,610
 Normal Paired: 13,903,268 (80.09%)
 Chimeric Paired: 2,832,557 (16.32%)
 Chimeric Ambiguous: 494,095 (2.85%)
 Unmapped: 128,690 (0.74%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 16,735,825 (96.41%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-11-22T05:27:08,447]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 10,747,275 (61.91%)
PCR Duplicates: 5,931,740 (34.17%)
Optical Duplicates: 56,810 (0.33%)
Library Complexity Estimate: 17,477,288
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 1,648,485 (9.50% / 15.34%)
Hi-C Contacts: 9,098,790 (52.42% / 84.66%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 3% - 90% - 3% - 3%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 80%
 Cis/all (FF and RR orient): 59.1%
Inter-chromosomal: 746,238  (4.30% / 6.94%)
Intra-chromosomal: 8,352,552  (48.12% / 77.72%)
Short Range (<20,000bp): 7,907,640  (45.55% / 73.58%)
Long Range (>20,000bp): 444,912  (2.56% / 4.14%)