Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-07-29_ENC/_hg38_canonical/NC_3 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  34,136,561
 Normal Paired: 21,578,786 (63.21%)
 Chimeric Paired: 10,356,796 (30.34%)
 Chimeric Ambiguous: 1,821,885 (5.34%)
 Unmapped: 379,094 (1.11%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 31,935,582 (93.55%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-08-22T10:20:13,732]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 27,917,425 (81.78%)
PCR Duplicates: 3,897,407 (11.42%)
Optical Duplicates: 120,750 (0.35%)
Library Complexity Estimate: 119,016,571
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,074,166 (11.93% / 14.59%)
Hi-C Contacts: 23,843,259 (69.85% / 85.41%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 7% - 79% - 7% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 69%
 Cis/all (FF and RR orient): 84.8%
Inter-chromosomal: 1,138,745  (3.34% / 4.08%)
Intra-chromosomal: 22,704,514  (66.51% / 81.33%)
Short Range (<20,000bp): 19,175,366  (56.17% / 68.69%)
Long Range (>20,000bp): 3,529,148  (10.34% / 12.64%)