Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202412201534workoct/Juicer-Out/2024-11-13_ENC/Oncobox/NC_3 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  67,805,581
 Normal Paired: 49,292,745 (72.70%)
 Chimeric Paired: 15,969,116 (23.55%)
 Chimeric Ambiguous: 2,267,713 (3.34%)
 Unmapped: 276,007 (0.41%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 65,261,861 (96.25%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-11-22T01:33:27,226]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 35,457,749 (52.29%)
PCR Duplicates: 29,621,241 (43.69%)
Optical Duplicates: 182,871 (0.27%)
Library Complexity Estimate: 47,567,468
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 5,797,201 (8.55% / 16.35%)
Hi-C Contacts: 29,660,548 (43.74% / 83.65%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 9% - 74% - 9% - 9%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 61%
 Cis/all (FF and RR orient): 84.3%
Inter-chromosomal: 1,802,935  (2.66% / 5.08%)
Intra-chromosomal: 27,857,613  (41.08% / 78.57%)
Short Range (<20,000bp): 22,773,715  (33.59% / 64.23%)
Long Range (>20,000bp): 5,083,898  (7.50% / 14.34%)