Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-07-29_ENC/_hg38_canonical/NS_29 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  49,486,779
 Normal Paired: 36,233,661 (73.22%)
 Chimeric Paired: 8,724,045 (17.63%)
 Chimeric Ambiguous: 1,693,516 (3.42%)
 Unmapped: 2,835,557 (5.73%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 44,957,706 (90.85%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-08-23T01:59:29,104]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 35,502,576 (71.74%)
PCR Duplicates: 9,296,724 (18.79%)
Optical Duplicates: 158,406 (0.32%)
Library Complexity Estimate: 92,423,923
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 7,090,284 (14.33% / 19.97%)
Hi-C Contacts: 28,412,292 (57.41% / 80.03%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 3% - 92% - 3% - 3%
 Pair Type inter chrom %(L-I-O-R): 23% - 27% - 23% - 27%
 DE: 86%
 Cis/all (FF and RR orient): 72.6%
Inter-chromosomal: 1,094,172  (2.21% / 3.08%)
Intra-chromosomal: 27,318,120  (55.20% / 76.95%)
Short Range (<20,000bp): 25,853,648  (52.24% / 72.82%)
Long Range (>20,000bp): 1,464,472  (2.96% / 4.12%)