Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202412201534workoct/Juicer-Out/2024-11-13_ENC/Oncobox/NS_29 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  11,497,695
 Normal Paired: 9,780,635 (85.07%)
 Chimeric Paired: 1,412,225 (12.28%)
 Chimeric Ambiguous: 179,556 (1.56%)
 Unmapped: 125,279 (1.09%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 11,192,860 (97.35%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-11-28T14:04:25,342]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 4,108,160 (35.73%)
PCR Duplicates: 7,058,997 (61.39%)
Optical Duplicates: 25,703 (0.22%)
Library Complexity Estimate: 4,478,041
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 593,155 (5.16% / 14.44%)
Hi-C Contacts: 3,515,005 (30.57% / 85.56%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 3% - 91% - 3% - 3%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 84%
 Cis/all (FF and RR orient): 75.9%
Inter-chromosomal: 135,875  (1.18% / 3.31%)
Intra-chromosomal: 3,379,130  (29.39% / 82.25%)
Short Range (<20,000bp): 3,170,094  (27.57% / 77.17%)
Long Range (>20,000bp): 209,036  (1.82% / 5.09%)