Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-07-29_ENC/_hg38_canonical/OPO_227 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  28,429,932
 Normal Paired: 16,764,631 (58.97%)
 Chimeric Paired: 8,478,495 (29.82%)
 Chimeric Ambiguous: 2,750,560 (9.67%)
 Unmapped: 436,246 (1.53%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 25,243,126 (88.79%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-08-22T13:52:02,305]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 22,321,625 (78.51%)
PCR Duplicates: 2,826,431 (9.94%)
Optical Duplicates: 95,070 (0.33%)
Library Complexity Estimate: 103,327,016
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 2,294,647 (8.07% / 10.28%)
Hi-C Contacts: 20,026,978 (70.44% / 89.72%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 6% - 81% - 6% - 6%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 66%
 Cis/all (FF and RR orient): 66.8%
Inter-chromosomal: 2,264,741  (7.97% / 10.15%)
Intra-chromosomal: 17,762,237  (62.48% / 79.57%)
Short Range (<20,000bp): 15,113,445  (53.16% / 67.71%)
Long Range (>20,000bp): 2,648,792  (9.32% / 11.87%)