Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202412201534workoct/Juicer-Out/2024-11-13_ENC/Oncobox/OPO_227 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                   
Sequenced Read Pairs:  60,248,008
 Normal Paired: 41,003,946 (68.06%)
 Chimeric Paired: 14,348,878 (23.82%)
 Chimeric Ambiguous: 4,242,660 (7.04%)
 Unmapped: 652,524 (1.08%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 55,352,824 (91.87%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-11-22T08:20:45,065]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 40,994,171 (68.04%)
PCR Duplicates: 14,151,633 (23.49%)
Optical Duplicates: 207,020 (0.34%)
Library Complexity Estimate: 88,147,021
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,361,053 (7.24% / 10.64%)
Hi-C Contacts: 36,633,118 (60.80% / 89.36%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 8% - 77% - 7% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 58%
 Cis/all (FF and RR orient): 59.5%
Inter-chromosomal: 6,254,207  (10.38% / 15.26%)
Intra-chromosomal: 30,378,911  (50.42% / 74.11%)
Short Range (<20,000bp): 25,240,521  (41.89% / 61.57%)
Long Range (>20,000bp): 5,138,390  (8.53% / 12.53%)