Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-07-29_ENC/_hg38_canonical/PrC_14 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  59,024,909
 Normal Paired: 40,206,190 (68.12%)
 Chimeric Paired: 10,421,132 (17.66%)
 Chimeric Ambiguous: 2,286,785 (3.87%)
 Unmapped: 6,110,802 (10.35%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 50,627,322 (85.77%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-08-22T09:25:05,995]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 42,370,148 (71.78%)
PCR Duplicates: 8,099,964 (13.72%)
Optical Duplicates: 157,210 (0.27%)
Library Complexity Estimate: 139,920,688
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 12,036,092 (20.39% / 28.41%)
Hi-C Contacts: 30,334,056 (51.39% / 71.59%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 3% - 92% - 2% - 3%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 87%
 Cis/all (FF and RR orient): 72.9%
Inter-chromosomal: 1,091,772  (1.85% / 2.58%)
Intra-chromosomal: 29,242,284  (49.54% / 69.02%)
Short Range (<20,000bp): 27,693,851  (46.92% / 65.36%)
Long Range (>20,000bp): 1,548,433  (2.62% / 3.65%)