Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202412201534workoct/Juicer-Out/2024-11-13_ENC/Oncobox/PrC_14 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  23,106,851
 Normal Paired: 18,941,040 (81.97%)
 Chimeric Paired: 3,204,180 (13.87%)
 Chimeric Ambiguous: 510,941 (2.21%)
 Unmapped: 450,690 (1.95%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 22,145,220 (95.84%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-11-22T05:52:54,462]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 8,383,224 (36.28%)
PCR Duplicates: 13,711,194 (59.34%)
Optical Duplicates: 50,802 (0.22%)
Library Complexity Estimate: 9,223,902
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 1,755,229 (7.60% / 20.94%)
Hi-C Contacts: 6,627,995 (28.68% / 79.06%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 3% - 91% - 3% - 3%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 83%
 Cis/all (FF and RR orient): 72.8%
Inter-chromosomal: 299,160  (1.29% / 3.57%)
Intra-chromosomal: 6,328,835  (27.39% / 75.49%)
Short Range (<20,000bp): 5,942,239  (25.72% / 70.88%)
Long Range (>20,000bp): 386,596  (1.67% / 4.61%)