Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-07-29_ENC/_hg38_canonical/SgC_2 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  57,058,297
 Normal Paired: 38,186,250 (66.92%)
 Chimeric Paired: 14,753,599 (25.86%)
 Chimeric Ambiguous: 2,321,196 (4.07%)
 Unmapped: 1,797,252 (3.15%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 52,939,849 (92.78%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-08-22T06:32:06,681]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 44,751,626 (78.43%)
PCR Duplicates: 7,967,471 (13.96%)
Optical Duplicates: 220,752 (0.39%)
Library Complexity Estimate: 156,360,248
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 8,123,843 (14.24% / 18.15%)
Hi-C Contacts: 36,627,783 (64.19% / 81.85%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 5% - 84% - 5% - 5%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 75%
 Cis/all (FF and RR orient): 85.3%
Inter-chromosomal: 1,332,019  (2.33% / 2.98%)
Intra-chromosomal: 35,295,764  (61.86% / 78.87%)
Short Range (<20,000bp): 30,793,542  (53.97% / 68.81%)
Long Range (>20,000bp): 4,502,222  (7.89% / 10.06%)