Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202412201534workoct/Juicer-Out/2024-11-13_ENC/Oncobox/SgC_2 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  80,000,039
 Normal Paired: 58,976,126 (73.72%)
 Chimeric Paired: 18,309,491 (22.89%)
 Chimeric Ambiguous: 2,167,760 (2.71%)
 Unmapped: 546,662 (0.68%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 77,285,617 (96.61%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-11-21T20:19:44,212]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 30,320,217 (37.90%)
PCR Duplicates: 46,785,527 (58.48%)
Optical Duplicates: 179,873 (0.22%)
Library Complexity Estimate: 33,759,640
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 3,877,754 (4.85% / 12.79%)
Hi-C Contacts: 26,442,463 (33.05% / 87.21%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 7% - 79% - 7% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 68%
 Cis/all (FF and RR orient): 83.8%
Inter-chromosomal: 1,388,500  (1.74% / 4.58%)
Intra-chromosomal: 25,053,963  (31.32% / 82.63%)
Short Range (<20,000bp): 20,982,063  (26.23% / 69.20%)
Long Range (>20,000bp): 4,071,900  (5.09% / 13.43%)