Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-07-29_ENC/_hg38_canonical/StS_1 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  36,563,325
 Normal Paired: 25,945,477 (70.96%)
 Chimeric Paired: 8,745,274 (23.92%)
 Chimeric Ambiguous: 1,293,604 (3.54%)
 Unmapped: 578,970 (1.58%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 34,690,751 (94.88%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-08-22T03:41:55,815]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 30,095,579 (82.31%)
PCR Duplicates: 4,467,441 (12.22%)
Optical Duplicates: 127,731 (0.35%)
Library Complexity Estimate: 121,913,027
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 2,875,042 (7.86% / 9.55%)
Hi-C Contacts: 27,220,537 (74.45% / 90.45%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 5% - 85% - 5% - 5%
 Pair Type inter chrom %(L-I-O-R): 24% - 26% - 24% - 26%
 DE: 76%
 Cis/all (FF and RR orient): 82.1%
Inter-chromosomal: 1,172,091  (3.21% / 3.89%)
Intra-chromosomal: 26,048,446  (71.24% / 86.55%)
Short Range (<20,000bp): 23,107,974  (63.20% / 76.78%)
Long Range (>20,000bp): 2,940,472  (8.04% / 9.77%)