Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202412201534workoct/Juicer-Out/2024-11-13_ENC/Oncobox/StS_1 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  67,138,154
 Normal Paired: 52,919,731 (78.82%)
 Chimeric Paired: 12,518,973 (18.65%)
 Chimeric Ambiguous: 1,390,375 (2.07%)
 Unmapped: 309,075 (0.46%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 65,438,704 (97.47%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-11-21T16:46:37,102]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 27,840,248 (41.47%)
PCR Duplicates: 37,444,016 (55.77%)
Optical Duplicates: 154,440 (0.23%)
Library Complexity Estimate: 32,001,012
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,234,427 (6.31% / 15.21%)
Hi-C Contacts: 23,605,821 (35.16% / 84.79%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 6% - 81% - 6% - 6%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 71%
 Cis/all (FF and RR orient): 83.7%
Inter-chromosomal: 1,113,634  (1.66% / 4.00%)
Intra-chromosomal: 22,492,187  (33.50% / 80.79%)
Short Range (<20,000bp): 19,482,469  (29.02% / 69.98%)
Long Range (>20,000bp): 3,009,718  (4.48% / 10.81%)